Difference between revisions of "Install PyMVPA Ubuntu"
From ACL@NCU
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==Install the following python packages== | |||
<pre> | <pre> | ||
#set up the NeuroDebian service | |||
wget -O- http://neuro.debian.net/lists/trusty.jp.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list | |||
sudo apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9 | |||
#install packages required by pymvpa | |||
sudo pip install numpy nibabel scipy scikit-learn matplotlib --upgrade | |||
#the pymvpa package | #the pymvpa package | ||
sudo apt-get install python-mvpa2 | sudo apt-get install python-mvpa2 | ||
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sudo apt-get install python-mvpa2-tutorialdata | sudo apt-get install python-mvpa2-tutorialdata | ||
</pre> | |||
*[[File:Tutorial data-0.4.tar.gz | | The tutorial dataset ]] | |||
*[http://manpages.ubuntu.com/manpages/utopic/man1/pymvpa2-tutorial.1.html syntax of using PyMVPA tutorial data] | |||
*[http://www.jonaskaplan.com/pymvpainstallation.php Install PyMVPA on Mac] | |||
==Learn basic concepts about PyMVPA== | |||
[http://haxbylab.dartmouth.edu/publications/HHS+09a.pdf PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data] | |||
==Some users' experience== | |||
[http://mvpa.blogspot.tw/2013/06/indexing-woes-story-of-pymvpa-r-and.html indexing woes: a story of pyMVPA, R, and mricron ] | |||
Latest revision as of 03:27, 12 January 2016
Install the following python packages
#set up the NeuroDebian service wget -O- http://neuro.debian.net/lists/trusty.jp.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list sudo apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9 #install packages required by pymvpa sudo pip install numpy nibabel scipy scikit-learn matplotlib --upgrade #the pymvpa package sudo apt-get install python-mvpa2 #the tutorial dataset sudo apt-get install python-mvpa2-tutorialdata
Learn basic concepts about PyMVPA
PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data