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Difference between revisions of "Install PyMVPA Ubuntu"

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[http://haxbylab.dartmouth.edu/publications/HHS+09a.pdf PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data]
[http://haxbylab.dartmouth.edu/publications/HHS+09a.pdf PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data]
==Some users' experience==
[http://mvpa.blogspot.tw/2013/06/indexing-woes-story-of-pymvpa-r-and.html indexing woes: a story of pyMVPA, R, and mricron ]

Revision as of 03:22, 12 January 2016

Install the following python packages

#set up the NeuroDebian service
wget -O- http://neuro.debian.net/lists/trusty.jp.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
sudo apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9

#install packages required by pymvpa
sudo pip install numpy nibabel scipy scikit-learn matplotlib --upgrade

#the pymvpa package
sudo apt-get install python-mvpa2

#the tutorial dataset
sudo apt-get install python-mvpa2-tutorialdata

Learn basic concepts about PyMVPA

PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data

Some users' experience

indexing woes: a story of pyMVPA, R, and mricron