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Difference between revisions of "FMRI navigation"

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(Created page with " == This page is for using AFNI on the acl_comp server to analyze the FMRI navigation experiment (starfield). == = Preprocessing = *These notes apply to 140.115.47.153 *Crea...")
 
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= Preprocessing =
= Preprocessing =
*These notes apply to 140.115.47.153
*These notes apply to 140.115.47.153
*Creating alias of commands (or “shortcuts”), under the home directory, use the nano command to edit a configuration file:  
==Creating alias==
*Create alias of commands (or “shortcuts”), under the home directory, use the nano command to edit a configuration file:  
<pre>
<pre>
nano .tschrc.aclexp
nano .tschrc.aclexp
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</pre>
</pre>


Replace contents within <> to suit your need. For example:  
*Replace contents within <> to suit your need. For example:  


<pre>
<pre>
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</pre>
</pre>
allows you to type just “cdnav” (without the quotes) to change directory from anywhere to /media/DATA1/navigation. You will have to reinitiate another instance of terminal for the new settings to be effective.
allows you to type just “cdnav” (without the quotes) to change directory from anywhere to /media/DATA1/navigation. You will have to reinitiate another instance of terminal for the new settings to be effective.
==GUI interface==
*You can initiate a graphic user’s interface (gui) of file manager by typing:
<pre>
nautilus
</pre>
*Or a gui editor by typing
<pre>
gedit
</pre>
*Note that when you initiate a gui in a terminal, you won’t be able to type new commands in that terminal. You can initiate another terminal from the SSH client gui.
== ==
=First Level GLM=

Revision as of 23:38, 12 November 2014

This page is for using AFNI on the acl_comp server to analyze the FMRI navigation experiment (starfield).

Preprocessing

  • These notes apply to 140.115.47.153

Creating alias

  • Create alias of commands (or “shortcuts”), under the home directory, use the nano command to edit a configuration file:
nano .tschrc.aclexp
  • Add to the bottom of the file:
alias <name_of_shortcut> <‘your command’>
  • Replace contents within <> to suit your need. For example:
alias cdnav ‘cd /media/DATA1/navigation’

allows you to type just “cdnav” (without the quotes) to change directory from anywhere to /media/DATA1/navigation. You will have to reinitiate another instance of terminal for the new settings to be effective.

GUI interface

  • You can initiate a graphic user’s interface (gui) of file manager by typing:
nautilus
  • Or a gui editor by typing
gedit
  • Note that when you initiate a gui in a terminal, you won’t be able to type new commands in that terminal. You can initiate another terminal from the SSH client gui.


First Level GLM